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20FA_CH-BI308A
Chapter 18: Oxidative Phosphorylation
ATP Synthase: Structure and Function (molecular simulation of ATP synthase in action)
20FA_CH-BI308A-Biochemistry
ATP Synthase: Structure and Function (molecular simulation of ATP synthase in action)
Last modified: Thursday, 8 November 2018, 3:06 PM
◄ Ch 18 Oxidative Phosphorylation (slides for Hayden lecture)
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CH308 F2020 syllabus Hybrid online and face to face
Welcome to CH/BI308 from Dr. Hayden!
News forum
Introduction to Biochemistry
5 tips to improve critical thinking (video)
How to turn handwritten documents into a PDF using Office Lens
Scientific Foundations for Future Physicians
reading log
Cornell-NoteTaking-System
Story Corp collection of health professional stories updated 2019
Exam 1 Fall 2020
Submit Exam I
Exam 1 Fall 2020 Key
Submit Exam II
Exam II Fall 2020 Key
Submit Exam III
Exam III Fall 2020 Key
Outline Peer Review Rubric
Literature Review Rubric 2020
Disease/Disorder Topic Selection
Draft 2 Peer Review
Literature Review FINAL DRAFT
Guide map to Ch 1 Introduction to the Chemistry of Life 3rd 4th and 5th edition questions
Muddiest Point Questions
1 - 5. Chapter 1 - Introduction to the Chemistry of Life (Dr. Hayden's Lecture Video)
1 - 5. Introduction to the Chemistry of Life (powerpoint)
1. What are functional groups? (video)
2. Biomolecules (video)
3. Biology: Cell Structure (video)
3. The inner life of the cell (video)
4. Reversible Reactions (Phet Simulation)
4 & 5. S 22 POGIL in-class activity
Build a tower, build a team (Video)
Submit S22 Understanding Complex Chemical Systems here
Guide map to Ch 2 Water 3rd 4th and 5th edition questions
Muddiest Point Questions
1-4. Ch 2 - Water (Dr. Hayden's Lecture Video)
Chapter 2 - Water powerpoint
1. Properties of Water (video)
2. Acid-Base Equilibria and Buffer Solutions (video)
Buffers and Henderson-Hasselbalch (Khan Academy)
3. Buffer Solution pH Calculations (video)
Buffers and Henderson Hasselbalch POGIL practice
S1 POGIL
Section 1 Rubric
Section 1 RG
How to practice effectively ... for just about anything (video)
Submit S1 Chemistry in an aqueous environment
Guide map to Ch 4 Amino Acids 3rd 4th and 5th edition questions
Muddiest Point Questions
1 - 4. Ch. 4 Amino Acids (Dr. Hayden's lecture)
Ch 4 Amino Acids Power point presentation used in Dr. Hayden's lecture
Article cited in Dr. Hayden's lecture
1. Amino Acids (Video)
2. Isoelectic point and zwitterion (video)
2. Strategy for calculating pI with Dr. Hayden
3. The peptide bond: Formation and Cleavage (video)
4. Working Backward to Solve Problems (video)
1-4 S2 In class activity (POGIL)
POGIL Additional skill exercise
Submit S2 Amino Acids and the Primary Structure
Guide map to Ch 6 Proteins Three Dimensional Structure 3rd 4th and 5th edition questions
Muddiest Point Questions
1-4 Ch. 6 - Proteins: 3D Structure (Dr. Hayden's Lecture Video)
Ch 6 Protein 3D structure powerpoint used in Dr. Hayden's lecture
1 - 2: Protein Structure (Video)
1-2 S3 structure of the protein alpha helix (in-class activity)
1-2 S3 Additional Skill Exercise (Additional Practice)
3 - 4. Conformational Stability (Video)
4. Protein Folding Mechanism (Video)
5. The Protein Folding Problem (TED Talk)
Submit S3 Structure of a protein alpha helix
Submit S4 3D Structure of Proteins
Guide map to Ch 7 Protein Function Myoglobin and Hemoglobin 3rd 4th and 5th edition questions
Muddiest Point Questions
1-6. Ch. 7 Protein Function: Myoglobin and Hemoglobin (Dr. Hayden's Lecture)
1-6. Ch 7. Protein Function Hemoglobin and Myoglobin (Powerpoint for Dr. Hayden's Lecture)
1. Haemoglobin and Oxygen Dissociation Curves (Video)
2. Structure and Function of Haemoglobin; Cooperativity (Video)
3. Oxygen-Hemoglobin Dissociation Curve (Video)
4-5. The Bohr Effect (Video)
6. What is Sickle Cell Anemia (Video)
How to manage your time (TED talk)
Animation of T to R state shift of hemoglobin
Submit S8 Hemoglobin - Structure and Function Part 1 and 2
Guide map to Ch 8 Carbohydrates 3rd 4th and 5th edition questions
Muddiest Point Questions
1-2. Ch. 8 Carbohydrates (Hayden Lecture)
Ch. 8 Powerpoint for Hayden Lecture
1. Carbohydrates Part 1: Simple Sugars and Fisher Projections (Video)
1. Carbohydrates Part 2 - Polysaccharides (video)
2. Influenza: Get the (antigenic) drift (video)
2. Swine Flu (H1N1) Mechanism of Action (Video)
3. How diversity makes teams more innovative (Ted Talk)
History of lectins: from hemagglutinins to biological recognition molecules
m cwh122f2
Submit S13 Carbohydrates and Glycoproteins
Guide map to Ch 9 Lipids 3rd 4th and 5th edition questions
Muddiest Point Questions
1-4. Ch. 9 Lipids and Biological Membranes (Hayden Lecture)
1-4. Ch 9 powerpoint used in Hayden Lecture
1. Lipids Part 1: TAGs, Fatty Acids and Terpenes (Video)
3-4. Cell Membranes are way more complicated than you think... (video)
Fried Chicken’s Deliciousness, Explained
Which is better? Hand sanitizer or soap?
Submit S14 Lipid Structure and Function
Guide map to Biochemical Techniques 3rd 4th and 5th edition questions
Muddiest Point Questions
1-3. Biochemical Techniques Hayden Lecture, Part I
1-3. Biochemical Techniques Hayden Lecture, Part II
1-3. Biochemical Techniques Powerpoint for Dr. Hayden's Lecture
Applied Biochemical Techniques Series
S6 POGIL activity
GE Lifesciences Gel Filtration/Size Exclusion Chromatography
GE Lifesciences Affinity Chromatography
SDS-PAGE
SARS-CoV-2 Structure (COVID-19)
Submit S5 Tools of Biochemistry
Submit S6 LWBGase
Guide map to Ch 11 Enzyme Catalysis
Muddiest Point Questions
1 - 4. Ch. 11 Enzyme Catalysis (Hayden Lecture)
Chapter 11 Enzyme Catalysis with notes (Dr. Hayden's PPT from lecture)
1. Enzymes (Video)
2 - 3. How Enzymes Work (Video/Molecular Simulation)
4. Energy Diagrams, Catalysts, and Reaction Mechanisms
Animation of serine protease mechanism
Why is snake venom so deadly? (Video)
Submit S9 Enzyme Catalysis
Guide map to Ch 12 Enzyme Kinetics
Muddiest Point Questions
1-3. Enzyme Kinetics (Lecture by Sean McCarthy Class of 2016)
Ch 12 Enzyme Kinetics Powerpoint
1-2. Enzyme Kinetics (MIT Video)
3. Kinetic Constants: Km and Vmax (Video)
Kinetics: Initial Rates and Integrated Rate Laws
Connected, but alone? (TED talk by Sherry Turkle) (copy)
Submit S10 Enzyme Kinetics
Guide map to Ch 12 Enzyme Inhibition
Muddiest Point Questions
1-3: Ch. 12 Enzyme Inhibition and Control (Dr. Hayden's Lecture)
Ch 12 Enzyme Inhibition and Control ppt from Hayden Lecture
1-3. Enzyme Inhibition, Part I: Competitive Inhibitors (Video)
1-3. Enzyme Inhibition, Part 2: Non-competitive inhibitors (Video)
1-3. Enzyme Inhibition, Part 3: Uncompetitive Inhibitors (Video)
4. Gleevec Inhibits Cancer-Causing Kinase BCR-ABL (Video)
4. Gleevec-Resistant Form of Kinase BCR-ABL
Enzyme catalysis not different just better (Article referenced in S12)
Submit S11 Enzyme Inhibition
Guide map to Ch 14 Introduction to Metabolism
Muddiest Point Questions
1-8. Chapter 14 Introduction to Metabolism (Hayden Lecture)
Ch 14 Metabolism powerpoint slides for Hayden Lecture
Metabolism and Nutrition, Part I (Crash Course A&P - Supplemental Video)
Metabolism and Nutrition, Part II (Crash Course A&P - Supplemental Video)
Metabolism and ATP (Professor Dave Explains - Supplemental Video)
Why Tech Needs Diversity
Submit S21 Understanding the Rate Determining Step
Submit S23 Understanding Far from Equilibrium Reactions
Submit S24 High Energy Compounds
Guide map to Ch 15 Glycolysis and Glycolysis Regulation
Muddiest Point Questions
Ch. 15: Glycolysis and Glycolysis Regulation (Hayden Lecture)
Ch 15 Glycolysis and Glycolysis regulation (ppt for Hayden Lecture)
Glycolysis-10-steps-explained-steps-by-steps-with-diagram
Sushi's Sublime Secrets
Glycolysis rap
ATP & Respiration (Crash Course Video)
Cellular Respiration Part 1 - Glycolysis (Professor Dave Video)
Regulation of Glycolysis and Gluconeogenesis (Khan Academy video)
10 ways to have a better conversation (TED talk by Celeste Headlee)
Submit S25 Enzymes in Glycolysis
Submit S26 Regulation of Glycolysis
Submit S29 Glycolysis and Gluconeogenesis Problem Solving 1
integrated metabolism figure
krebs-cycle-or-tricarboxylic-cycle-or-citric-acid-cycle-2-638
Guide map to Ch 15 Other Hexoses and PPP
Muddiest Point Questions
Ch. 15 Metabolism of other Hexoses and the Pentose Phosphate Pathway (Hayden Lecture)
Ch 15 Other Hexoses and PPP (Hayden Lecture ppt)
Diagram of PPP and glycolysis
Discussion on metabolism of fructose in the liver
How do carbohydrates impact your health? (Supplemental TED Ed Video)
Why Fava Beans Can Kill You (SciShow)
The Neuroscience of Imagination (TED Ed)
Submit S31 Pentose Phosphate Pathway
Guide map to Ch 16 Glycogen Metabolism and Gluconeogensis
Muddiest Point Questions
Ch. 16 - Glycogen Metabolism and Gluconeogenesis (Hayden Lecture)
Ch 16 Glycogen Metabolism and Gluconeogensis
What is Glycogen? (Supplemental video)
Insulin and Glucagon (Supplemental Video)
What does the pancreas do? (Supplemental Video)
What does the liver do? (Supplemental Video)
Gluconeogenesis (Supplemental Video)
How to ask better questions (TEDx Talk)
Submit S30 Glycolysis and Gluconeogenesis Problem Solving 2
Guide map to Ch 17 The Citric Acid Cycle
Muddiest Point Questions
Ch. 17 The Citric Acid Cycle (Hayden Lecture)
Ch17 The citric acid cycle (ppt for Hayden Lecture)
The citric acid song!
Tracking Labeled Carbons in Glucose
Mystery Diagnosis - Lethal Diet - Pyruvate Dehydrogenase Complex Deficiency (PDCD) - Part One
Mystery Diagnosis - Lethal Diet - Pyruvate Dehydrogenase Complex Deficiency (PDCD) - Part Two
Submit S32 Exploring Pyruvate Dehydrogenase and the Citric Acid Cycle
32
Submit S33 Exploring The Citric Acid Cycle
33
Guide map to Ch 18 The Electron Transport Chain
Muddiest Point Questions
1. Ch. 18 - The Electron Transport Chain (Hayden Lecture)
Ch 18 ETC (slides for Hayden Lecture)
The Big Picture
Electron Transport Chain (Music Video)
Oxidation-Reduction Reactions (Professor Dave Explains)
The Devastating Effects of Gold Mining
DNP case study handout -- Please read this prior to our 2nd class meeting
DNP Case Study Read Through
DNP Case Study Supporting Material
DNP case study powerpoint
DNP Worksheet to turn in after completing the activity
The Problem with Race-based Medicine
Submit S34 Electron Transport
34
Guide map to Ch 18 Oxidative Phosphorylation
Muddiest Point Questions
Ch 18: Oxidative Phosphorylation (Hayden Lecture)
Ch 18 Oxidative Phosphorylation (slides for Hayden lecture)
Introduction to Mitochondrial Diseases (HarvardX lecture)
How we'll fight the next deadliest virus (TED talk)
Submit S35 Oxidative Phosphorylation
35
Guide map to Ch 20 Part I Fatty Acid Catabolism
Muddiest Point Questions
Ch. 21: Lipid Metabolism, Part I - Catabolism and Ketone Bodies (Hayden Lecture)
Ch 20 Fatty Acid Catabolism Powerpoint
Calculating ATP from catabolism of fatty acids
What happens when you eat too much (ACS Reactions Video)
How does Cystic Fibrosis effect the Pancreas? (supplemental video)
Own Your Behaviours, Master Your Communication, Determine Your Success (TEDx talk)
Submit S36: Fatty Acid Degradation and Glucose Synthesis
36
Guide map to Ch 20 Part II Fatty Acid Anabolism
Muddiest Point Questions
Ch 20 FA Anabolism Video - Hayden Lecture
Ch 20 FA anabolism PPT
Step by step animations of FA metabolism
Why genetic research must be more diverse
Submit S37 Understanding Fatty Acid Biosynthesis
37
Ch 21 Amino Acid Catabolism Video - Hayden Lecture
Ch 21 Amino Acid Catabolism ppt
Muddiest Point Questions
Urea Cycle Additional Video
The World Needs All Kinds of Minds
Submit S38 The Urea Cycle and the Effects of Protein Degredation
38
Integrated Metabolism - Hayden Lecture
Integrated Metabolism PowerPoint
Muddiest Point Questions
What makes us sick? Look Upstream
Submit S39 Integrated Metabolism
39
Introduction to Mitochondrial Diseases (HarvardX lecture) ►